Scaffold JGI1221J15618_1034225

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold JGI1221J15618_1034225

Scaffold JGI1221J15618_1034225

Overview

Basic Information
Taxon OID	3300001523 Open in IMG/M
Scaffold ID	JGI1221J15618_1034225 Open in IMG/M
Source Dataset Name	Hypersaline microbial communities from Lake Vida, Antarctica - Brine Hole Two >0.2 micron
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1632
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Prevotella → unclassified Prevotella → Prevotella sp. E2-25	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Unclassified → Hypersaline → Hypersaline Microbial Communities From Lake Vida, Antarctica

Source Dataset Sampling Location
Location Name	Lake Vida, Antarctica
Coordinates	Lat. (^o)	-77.38861	Long. (^o)	161.931111	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F008854	Metagenome	327	Y
F027681	Metagenome	194	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI1221J15618_10342251	F008854	N/A	MSIPISKKDLLRVIDEVRQEVCDKELTVLTYECHNGDRFSNNYEITEYGNTRFKFEITT*
JGI1221J15618_10342253	F027681	N/A	MRNWIIFTFFLYREFKIFGRTFSRVRAATPTVIAFFFGVISQTIIGSEHWLVLLIEWIPFIICIFLGFYYYKYKPVKYDEXLDWQQQFKYLSKPDQIGTKDETFPDGIYYTIEMKRLDKTHFNYFGKAKNVDVLIGLAPLWITAIGSIIYVLLQ*

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