Scaffold JGI1221J15618_1036195

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold JGI1221J15618_1036195

Scaffold JGI1221J15618_1036195

Overview

Basic Information
Taxon OID	3300001523 Open in IMG/M
Scaffold ID	JGI1221J15618_1036195 Open in IMG/M
Source Dataset Name	Hypersaline microbial communities from Lake Vida, Antarctica - Brine Hole Two >0.2 micron
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1261
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Unclassified → Hypersaline → Hypersaline Microbial Communities From Lake Vida, Antarctica

Source Dataset Sampling Location
Location Name	Lake Vida, Antarctica
Coordinates	Lat. (^o)	-77.38861	Long. (^o)	161.931111	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F037979	Metagenome	167	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI1221J15618_10361954	F037979	N/A	MSSSELSEGGKLIQIGISTADGVNRSYTMNPGPCQWSEQAEAVHGLSLESLQPFRSPAEVDEDLYEFLLAIGADTKSRGKTIPVGFNVGAFDMPFVKDSLPKSYSLFSRRTVDLNAICFALDHKEHNGMPVKAETWKKRAKAYAIEKIGMENQHDAGWDAEMHIHCFQYLRAAMS*

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