Scaffold chfe1id_10006391

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold chfe1id_10006391

Scaffold chfe1id_10006391

Overview

Basic Information
Taxon OID	3300001528 Open in IMG/M
Scaffold ID	chfe1id_10006391 Open in IMG/M
Source Dataset Name	Virome of Chimps sample 1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	6388
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Primate Fecal → Primate Fecal Viral Communities From Gombe National Park, Tanzania

Source Dataset Sampling Location
Location Name	Gombe National Park, Tanzania
Coordinates	Lat. (^o)	-4.4	Long. (^o)	29.38	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F052660	Metagenome	142	N

Sequences

Protein ID	Family	RBS	Sequence
chfe1id_100063916	F052660	AGGA	MCILRVLPENTPEKIGQERAGTEWTVVKSKIRLCIRNCSYGQFLHGGILMGIALPIPSYRAKSHDFACWWTAAAGHSRSANALPGKSNP*

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