NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold MLSed_10031313

Scaffold MLSed_10031313


Overview

Basic Information
Taxon OID3300001533 Open in IMG/M
Scaffold IDMLSed_10031313 Open in IMG/M
Source Dataset NameBenthic freshwater microbial communities from British Columbia, Canada
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8025
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (85.71%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Benthic → Benthic Freshwater Sediment Microbial Communities From British Columbia, Canada

Source Dataset Sampling Location
Location NameBritish Columbia, Canada
CoordinatesLat. (o)49.283333Long. (o)-119.583333Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027486Metagenome194Y
F065518Metagenome / Metatranscriptome127Y

Sequences

Protein IDFamilyRBSSequence
MLSed_1003131312F065518AGGAGMSKFDEVQEAAKRRAAGFTASETLARTIVAAAQGDARLAYDYLDALNKHVTDILQGKKQ*
MLSed_1003131314F027486GGAGMGKSMTKKENPICRSFRQDFPEFVARAEALGVNISLGEGRRNGRERVFWLDGYKQLTGYTTRSDGMPFTRWDAEKNIDKILTQIEEDRAATAELSIPDRFARVMAEFRQMVPQYRMIGEVRQPNGDRGHVFFMADYDGGVSLDGAEVAKAKAKWQQGETDKAHMARFCDMLEADFARRQEEVAA*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.