NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold MLSed_10044224

Scaffold MLSed_10044224


Overview

Basic Information
Taxon OID3300001533 Open in IMG/M
Scaffold IDMLSed_10044224 Open in IMG/M
Source Dataset NameBenthic freshwater microbial communities from British Columbia, Canada
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3868
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (90.91%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Benthic → Benthic Freshwater Sediment Microbial Communities From British Columbia, Canada

Source Dataset Sampling Location
Location NameBritish Columbia, Canada
CoordinatesLat. (o)49.283333Long. (o)-119.583333Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F067543Metagenome / Metatranscriptome125Y

Sequences

Protein IDFamilyRBSSequence
MLSed_100442244F067543GGAGGMTPTVETSGYRISPRVVLQPGDRFKVAAGPYYRCSDGRKLPLAARGTFRLVEVIRHRSRVHLLAHGVEGFALLHVEGRRRSPVPGLVPRPYRITRKVKT*
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