NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI20169J15301_1000909

Scaffold JGI20169J15301_1000909


Overview

Basic Information
Taxon OID3300001541 Open in IMG/M
Scaffold IDJGI20169J15301_1000909 Open in IMG/M
Source Dataset NameNasutitermes corniger P1 segment gut microbial community from laboratory colony in Florida, USA - Nc150 P1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1448
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota(Source: Euk_MAG)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut → Cubitermes And Nasutitermes Termite Gut Microbial Communities From Max Planck Institute For Terrestrial Microbiology, Germany

Source Dataset Sampling Location
Location Namelaboratory colony in Florida, USA
CoordinatesLat. (o)26.0625Long. (o)-80.2332Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012306Metagenome282Y

Sequences

Protein IDFamilyRBSSequence
JGI20169J15301_10009091F012306N/ALSEIIRTYPKLSELIRTYPNSSELIRTHPKSSEFIRPHPYLSERIRTYPNLSELIRTHPNLSELIRTHPKLSELIRTYPNSSELIRTYPNSSELIRTYPNSSELIRTYPNLSELIRTYPNISELIRTYPNSSELIRSYPNSSELIRTYPNLSELIRTYSNISELIRTHPNLSDLIRTYPNLSELI*
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