NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI20167J15610_10060500

Scaffold JGI20167J15610_10060500


Overview

Basic Information
Taxon OID3300001542 Open in IMG/M
Scaffold IDJGI20167J15610_10060500 Open in IMG/M
Source Dataset NameNasutitermes corniger crop gut microbial community from laboratory colony in Florida, USA - Nc150C
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)562
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut → Cubitermes And Nasutitermes Termite Gut Microbial Communities From Max Planck Institute For Terrestrial Microbiology, Germany

Source Dataset Sampling Location
Location Namelaboratory colony in Florida, USA
CoordinatesLat. (o)26.0625Long. (o)-80.2332Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F052005Metagenome143Y
F083358Metagenome113Y

Sequences

Protein IDFamilyRBSSequence
JGI20167J15610_100605001F083358N/AMNSAALIKQERQNNLRRATRTIAKRVEKCVEVDGGIF*
JGI20167J15610_100605002F052005GAGMNLNKTKYLCTGETHSNLKFDKDSEIEFCQEYKYLGVIDTSGTDDKEISSRVIQARKCRLHYE*

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