NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI20163J15578_10003046

Scaffold JGI20163J15578_10003046


Overview

Basic Information
Taxon OID3300001544 Open in IMG/M
Scaffold IDJGI20163J15578_10003046 Open in IMG/M
Source Dataset NameCubitermes ugandensis P1 segment gut microbial communities from Kakamega Forest, Kenya - Cu122 P1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6859
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut → Cubitermes And Nasutitermes Termite Gut Microbial Communities From Max Planck Institute For Terrestrial Microbiology, Germany

Source Dataset Sampling Location
Location NameKakamega Forest, Kenya
CoordinatesLat. (o)0.2917Long. (o)34.856Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000031Metagenome4897Y
F028846Metagenome190Y
F030142Metagenome186Y

Sequences

Protein IDFamilyRBSSequence
JGI20163J15578_100030461F030142N/AVQIGISVVAVVVKTEHLALTIVVTLCQCHEMDVKEEQHVAIKFCCKVYFLATKPVELIQKAYSDTALS*
JGI20163J15578_100030462F000031AGGAMKGGIEVAGRRGRRHRKLLDDLKERRGYPHLKEEALDHIMWRARFGRGFGPVVRRTTK*
JGI20163J15578_100030466F028846GGAGVRDNSNFVFRHTLVGEDGSVRRGVVVVKQPGLFLPKLGAMSSHVFTQSPQNFTVEPGIHSLACWDKFFVHNHLDVKESDDHALEIAFHLSGLFWHW*
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