NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI12659J15293_10005892

Scaffold JGI12659J15293_10005892


Overview

Basic Information
Taxon OID3300001546 Open in IMG/M
Scaffold IDJGI12659J15293_10005892 Open in IMG/M
Source Dataset NameForest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3579
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameAlgoma, Ontario, Canada
CoordinatesLat. (o)46.42Long. (o)-83.37Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007325Metagenome / Metatranscriptome353Y
F061166Metagenome / Metatranscriptome132Y

Sequences

Protein IDFamilyRBSSequence
JGI12659J15293_100058921F061166AGGAGGMRLSVWPFACFAGFLFCIPGIFAQTNPPPPDPHEMVTREPRTVSKPADRSAALDLLDRARKNFDLHHISTPYALKVSFETNGAAQIEGGGTMEEFYDGQSRWRWTGQLQDSNLIRIGAEDRIYGSNPSQAVPLRVQLVHSVLLRPIVHDTAAFLIRAANVERDGKTLSCLLLSHSLPPNPAPRSWVEREDCIDPATGLLVMWSEAPGIYAVYDYTGAADFHGHILPRQISIFEEGRLAIQVRVESLEDAPNIDPNLFQPTPEMVEAGESFGLASPQRLPLRVDPSDAPTSRFFQPVIVHATLD
JGI12659J15293_100058924F007325GGAMLGLRYLFRLSGTVTLFALVAAVATDAASSNKPTVEELKARLLSTSVGDRPHLCVQIAEKQLSQADTLYAAAEIEKGQAALTDVVAFSELARDYAIQSHKYQKQTEIAARSMTRKLTDLLHTLAHDDQAPVRDAINRLQRVRDDLLRTMFPKGAK*
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