Scaffold Draft_10005646

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Draft_10005646

Scaffold Draft_10005646

Overview

Basic Information
Taxon OID	3300001567 Open in IMG/M
Scaffold ID	Draft_10005646 Open in IMG/M
Source Dataset Name	Hydrocarbon resource environments microbial communities from Canada and USA - Toluene degrading community from Alberta, Canada
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	McGill University
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	11193
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (63.64%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Industrial Wastewater → Petrochemical → Unclassified → Hydrocarbon Resource Environments → Hydrocarbon Resource Environments Microbial Communities From Canada And Usa

Source Dataset Sampling Location
Location Name	Northern Alberta, Canada
Coordinates	Lat. (^o)	54.0	Long. (^o)	-114.0	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F005327	Metagenome / Metatranscriptome	404	Y

Sequences

Protein ID	Family	RBS	Sequence
Draft_100056469	F005327	GGAG	MIFGVNATKSAVVVAQTRGASANFVITAIKHISFQVCSGDELAELLQNLSRLFDSNGKAAGSVIALLKCSSGRFGSCLEAIKGEAMVELAASQRGLRIVKIAPQSLKKTLGCAKDQKWRDRAGELFNPDGKRPDWYKGAAGAVAAAFKVAGE*

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