NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Draft_10001052

Scaffold Draft_10001052


Overview

Basic Information
Taxon OID3300001580 Open in IMG/M
Scaffold IDDraft_10001052 Open in IMG/M
Source Dataset NameWastewater microbial communities from Syncrude, Ft. McMurray, Alberta - Microbes from Suncor taillings pond 6 2012TP6_6
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMcGill University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)29129
Total Scaffold Genes32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (18.75%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Industrial Wastewater → Petrochemical → Unclassified → Hydrocarbon Resource Environments → Hydrocarbon Resource Environments Microbial Communities From Canada And Usa

Source Dataset Sampling Location
Location NameSuncor Tailings Pond 6, Northern Alberta, Canada
CoordinatesLat. (o)57.05Long. (o)-111.55Alt. (m)Depth (m)6
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009453Metagenome / Metatranscriptome317Y

Sequences

Protein IDFamilyRBSSequence
Draft_100010528F009453N/AMAQAGTLLSDLDSKPPVLNAKDDDLVNKILADMNVPSQTNPIITPSSGDGRIIASPNPNSTYPIAIDPGTATAHMIGKDYPSSSDFAHLMHSPQFAHGGSQFANVQQQVYQQQPTLIETAKGNMYSDIISQIKQPLLVAIIVFIVSLPIVNVLIGHYLPTLLRIGGDLTTAGIAVKALFGGFMFWFIQKVLVPLMIV*
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