NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI24005J15628_10011061

Scaffold JGI24005J15628_10011061


Overview

Basic Information
Taxon OID3300001589 Open in IMG/M
Scaffold IDJGI24005J15628_10011061 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-40
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4141
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (88.89%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → unclassified viruses → Virus sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)50.0Long. (o)-145.0Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000613Metagenome / Metatranscriptome985Y
F003678Metagenome / Metatranscriptome474Y
F006008Metagenome / Metatranscriptome384Y
F017146Metagenome / Metatranscriptome242Y

Sequences

Protein IDFamilyRBSSequence
JGI24005J15628_100110611F006008AGGAGMPLVKKRLSIAAGATSDQVLSGTTYEYVDPGTRIVVAAAVDTVGSATADTT
JGI24005J15628_100110615F000613AGGAGMPLVKKRLSIAAGATSDQVLTGTTYEYVDPGTRIVVAAAVDTVGSATADTTMDFNVNNAEFSKNASVSALVTGEPFGWNGNYAMNDMVTTGQVRNRPVITFTNGTSGTRVVDVAIFIGG*
JGI24005J15628_100110616F017146AGGTGGMRITRKMKSQYRAVLNLAQGDYDQAASMIGVSTDMFIMVLLKRFRNDGPVVTKAALRKTKTTVRRLKSMCDMYDSLRPTATRRKTPMRRAATTLISNK*
JGI24005J15628_100110618F003678GGALLYAPLFIASLALILCFYACVRVGQFINASKGLDWDAVANITGDLATTKKTIQTLNNRLNGMHSPKLADQELMMQLMQRQPNQQMNGTIQNVGG*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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