NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI24005J15628_10028269

Scaffold JGI24005J15628_10028269


Overview

Basic Information
Taxon OID3300001589 Open in IMG/M
Scaffold IDJGI24005J15628_10028269 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-40
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2350
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)50.0Long. (o)-145.0Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007825Metagenome / Metatranscriptome344Y
F017756Metagenome239Y
F019389Metagenome230Y

Sequences

Protein IDFamilyRBSSequence
JGI24005J15628_100282691F019389N/AMKNNNWKDDFIKFVNKMSKKKGWSSDDSNPFFYQIHFLNMTNAKSLREYK
JGI24005J15628_100282692F017756N/AMSTLLELVKIQAVIDNRKPASDTIETLETTYRFSKSKGVNIKLGDMHIDHFLRSLNLEKVEKNVVDINTAKIIERQKKTLIKIKRLINEK*
JGI24005J15628_100282693F007825N/AMTITVHYNTKKDLKNNVGSELDYTETNIFKDEYTENGTVIGCDINRKFFAKITIENNIIKKVS*
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