NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI24005J15628_10054271

Scaffold JGI24005J15628_10054271


Overview

Basic Information
Taxon OID3300001589 Open in IMG/M
Scaffold IDJGI24005J15628_10054271 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-40
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1527
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)50.0Long. (o)-145.0Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011254Metagenome / Metatranscriptome293Y
F029901Metagenome / Metatranscriptome187Y

Sequences

Protein IDFamilyRBSSequence
JGI24005J15628_100542711F029901AGGAMSRGVLLFCFDTEHTRYHKILERCVRLVKRNICKEITVVTDFATYQRMSPMGFINYK
JGI24005J15628_100542713F011254N/AMQVHIFTNADTTVECQDLDRRVIDQHKVFDLPDAWHKITIPLPRTDIKDIKIGDESIKHCLNSGINTAIGYEIWLHGDPAEYFSRIAECIAHEDLLRFKNLKNKYLITESWNEQVEGDFIPSSVRQFFAKGEGPHWYHKEDFNNLPYVEYEGPEIDTSIDLDEDLTFVDKKFYGQGQCKSLKPQPVLPTIRLDQIKNQKLKNTMRQFGFTDILQMQYVELQPNSVLPIHKDDFTYEDGKHIIDGPTQLYCVLSGDPKGIKFKFKNAGLLDVSKPIFINNRRFVHSLVYTGDIPRGVLLAYGIRQPR*
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