NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold JGI24005J15628_10114315

Scaffold JGI24005J15628_10114315


Overview

Basic Information
Taxon OID3300001589 Open in IMG/M
Scaffold IDJGI24005J15628_10114315 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-40
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)880
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)50.0Long. (o)-145.0Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003592Metagenome / Metatranscriptome478Y
F018076Metagenome / Metatranscriptome237N

Sequences

Protein IDFamilyRBSSequence
JGI24005J15628_101143151F003592GAGGMRFKKYYKDILSLIASLSLLASVYFANHYDIKQLYREFVGLRLKVQVQEKLIDSLEDRVNLLSEQNEVLLVDLEEHNETRGXXXXXLLERLQDLEYKIEVMSMKSTISSNGKVFNDRFEFTDKQVNRIGNYETNGQVLVAWKDDYLATKKVNVNTIGEINVVPKIKKLDKDKFVSYIDESYLGGITIRG
JGI24005J15628_101143152F018076N/ATENVMDSRYDLVEQDSDFEMTARVIYLGRPRTSTTFLGLFRRETSTTEVRVVVELKNKKTGQVVSGNGVGTIDREISATGFQINEELPFDRSELGGALKEAIGNAVQEIL*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.