NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI12635J15846_10000070

Scaffold JGI12635J15846_10000070


Overview

Basic Information
Taxon OID3300001593 Open in IMG/M
Scaffold IDJGI12635J15846_10000070 Open in IMG/M
Source Dataset NameForest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)66580
Total Scaffold Genes70 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)53 (75.71%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Associated Families7

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameThunder Bay, Ontario, Canada
CoordinatesLat. (o)49.08Long. (o)-89.38Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000512Metagenome / Metatranscriptome1064Y
F000739Metagenome / Metatranscriptome913Y
F006229Metagenome / Metatranscriptome378Y
F007488Metagenome / Metatranscriptome350Y
F009917Metagenome311Y
F033455Metagenome / Metatranscriptome177Y
F084509Metagenome112Y

Sequences

Protein IDFamilyRBSSequence
JGI12635J15846_1000007012F007488GAGMKIRAYEESDLEALRAIHARQGFGYAFPDLGNPLFLTKLVLGREEDGKGIAGAALLRLTAEAYLLLDPEAGSPRERWQWLLGLHEATRRDALARGLEDVHAWLPPEIAKKFGKRLTRLGWVRDDEWTPYCKRLEPTFAVVNGKGT*
JGI12635J15846_1000007016F009917AGGAMGTSGWTYLVVVFSVGAQLVVFLRWMHRRMRDDEIQRVFVRDLALRHLPNIYRALNVIAERQGIKLEEMPSVNYVDMRNGGRLR*
JGI12635J15846_100000702F000512N/AMIQVIRERHETPENVARRLCLAGGMNRYGEANYRVVWGWNRLGWIGGKFEDRDSAGNLVREVVELRWEPKYPQVNRWHVERWVPAEAYGSPRAWYAQTTERADGKSVAALGPYPERGEYEHCYTLQGPRGEFVQLTPTIAEHVARAIEWARGRDRASQRAKLYEREAREERAYEEWAFEVMDDGAPAMSGAPMVAVG*
JGI12635J15846_100000703F000739GGAGMRASRVEVWLKGMLAAGVSGAAGGVMTGLAAVGIDPGHFNLQAGMGATVRIGAAAALINAVIGVAAYLQKSPLPEG*
JGI12635J15846_100000707F006229GAGGMNKQSDVVSLVNISTQKWPPRHRTYFGSLTIQSPEAGAAYAVTPVRACTSLMDLGDKRTMEIRLSAQEIAEDLVREINGDSGEGSYHGVFVAAGPEPTKEELAEAQKKLEAFQRRLVETADLEWERSHNMMFITDLERRAARELRLEKPWLYDPKPMADCPACGEKIRPGVAVCRTCGAILDREKAAKFGLAEREEKSGEVAKPVDKKPTREK*
JGI12635J15846_1000007070F033455N/AMKILVQHFRVSMAGANSIVEFEAIVSHKQQVEIVAQLSRQGVITEVIPVEGHHG*
JGI12635J15846_100000709F084509AGGAGMPSYGNVLPPVSVGFGESAAVIASTDVIFPAPFKSAQVALAPAFSSGKVRAAVEIVWSAAPGVISVQFQTADTDIDAAYIQEGAAISNVNTGNVTRAEFPDVVAKFARILIATLPNNVTATAKISA*

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