NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI12635J15846_10037465

Scaffold JGI12635J15846_10037465


Overview

Basic Information
Taxon OID3300001593 Open in IMG/M
Scaffold IDJGI12635J15846_10037465 Open in IMG/M
Source Dataset NameForest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3810
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameThunder Bay, Ontario, Canada
CoordinatesLat. (o)49.08Long. (o)-89.38Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036450Metagenome / Metatranscriptome170Y
F092417Metagenome / Metatranscriptome107Y

Sequences

Protein IDFamilyRBSSequence
JGI12635J15846_100374652F092417AGGAGVNVWINKRVTLNDSWGPGAAHTLTTPLGQQPEFSLRPRYLRDAQGNRQLAHFSIDFPSGFLADGWGGVNFTPMGTIAVAGIKGLAPWDPSQSAAYRKAIDAASVSLGDSRTERLEGVIPHLGSQGGVGYNKVRLFYVANAVQGPIPDLVVIKIATHVAIPGTVQARQDGTGHGPPH*
JGI12635J15846_100374653F036450AGGAGGMETRRLRTIQQPSHIERLLEALVSRANLLPKDCYQIRDPAALPPPLQTVIAQAAREGRVWGCWANSFETCLFTCEMSLPRSRERGVPVLLVNRHGESGELQDAGAWMTDLEGKWRRCSD*
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