NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI12635J15846_10564580

Scaffold JGI12635J15846_10564580


Overview

Basic Information
Taxon OID3300001593 Open in IMG/M
Scaffold IDJGI12635J15846_10564580 Open in IMG/M
Source Dataset NameForest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)665
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameThunder Bay, Ontario, Canada
CoordinatesLat. (o)49.08Long. (o)-89.38Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004291Metagenome / Metatranscriptome445Y
F010654Metagenome / Metatranscriptome301Y
F015246Metagenome / Metatranscriptome256Y

Sequences

Protein IDFamilyRBSSequence
JGI12635J15846_105645801F010654GAGVKQHLGRQSGVQNVEVSLIDGKVQITPKEDGRIDPPQLLKAVYDSGVSVAEMDVTVRGKLVKDTSGTLSLQVEPNQSFAIAPN
JGI12635J15846_105645802F004291AGGGGGMNKKLALFVLLGSIIAPVAQAQIKHIELRVEGMT*
JGI12635J15846_105645803F015246N/AESKNVAREWFIGPELTWLHAQDDRIAGVNQSGSGSGGDVLLAGITTFVGVRPGTHVWVGMDWDVAHTNGALFMPVRRHITFGITQQFRLHF*
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