Scaffold Mariner_1033168

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Mariner_1033168

Scaffold Mariner_1033168

Overview

Basic Information
Taxon OID	3300001678 Open in IMG/M
Scaffold ID	Mariner_1033168 Open in IMG/M
Source Dataset Name	Black smokers hydrothermal plume microbial communities from Mariner, Lau Basin, Pacific Ocean -IDBA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1456
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → unclassified viruses → Circular genetic element sp.	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers → Black Smokers Hydrothermal Plume → Black Smokers Hydrothermal Plume Microbial Communities From Mariner, Lau Basin, Pacific Ocean

Source Dataset Sampling Location
Location Name	Mariner, Lau Basin, Pacific Ocean
Coordinates	Lat. (^o)	-20.180059	Long. (^o)	-176.601242	Alt. (m)		Depth (m)	1900
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F005319	Metagenome	405	Y
F005551	Metagenome	397	Y

Sequences

Protein ID	Family	RBS	Sequence
Mariner_10331682	F005551	GAG	MTLAASKSISRVKDGNIYGWSGSYGLTSSAVTLLDYTNPSGFYLTRITLGIDWSSIGVGEVLSYVINVDGQILFLEKFVVDADNSGQQPKMFEFIIPPNSTVKIQATESANNGAISCMLTGYRV*
Mariner_10331684	F005319	GAGG	MTDAAFYLFALISFVIYFLIYTYYVPLKTQQKIESWLKSAESDETLLMSLDVITKKIREQMLIDFEEFMLPQARESLQKFWSGAMGNAAKELKGSEEGSNLSLLHNITQDLSGQPWYIQALASKMLPMITEAVKTQPKRTSDAIL

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