NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold TahiMoana_1010100

Scaffold TahiMoana_1010100


Overview

Basic Information
Taxon OID3300001679 Open in IMG/M
Scaffold IDTahiMoana_1010100 Open in IMG/M
Source Dataset NameBlack smokers hydrothermal plume microbial communities from Tahi Moana, Lau Basin, Pacific Ocean
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4026
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (44.44%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers → Black Smokers Hydrothermal Plume → Black Smokers Hydrothermal Plume Microbial Communities From Tahi Moana, Lau Basin, Pacific Ocean

Source Dataset Sampling Location
Location NameTahi Moana, Lau Basin, Pacific Ocean
CoordinatesLat. (o)-20.682131Long. (o)-176.183363Alt. (m)Depth (m)2230
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005319Metagenome405Y
F005551Metagenome397Y
F014809Metagenome260Y

Sequences

Protein IDFamilyRBSSequence
TahiMoana_10101001F014809N/AMPATTIQRSFDSTPTDKEYFSLTDNMNSSNLGNIQVPQGSTRISRVDCAIDGFNAKGFQVVCRLLGSNMSEQNFTIMGIAGDTADAACAVGFNSVPVAFGIAGVNNIDLQIAIQISGGGSMAASSGSVTLYFE*
TahiMoana_10101005F005319AGGMNDQTFYAIWIFSFFLYFTIYTIWIPLKTQKKIESWLKSSESDETLLMSLDVITKKIREQMLIDFEEFMLPQARESFQKFWSGAMGNAAKELKGSEEGSQLSLLHNMTQDLSGQPWYIQAAASKLLPMITEAAAKGPKRKSDAVLGMGLQK*
TahiMoana_10101007F005551GAGMSLAASKSVSRAKGGNIYGWSGSHSLTSSAVTLLDYTNPSAFYLTRITLGVDWSGISDGEVLSYIVSVDGQALFVEKFVVLVNNIGIQPKMFEFMIPPNSTVKIQATQDSNNGAISCILTGYRV*
TahiMoana_10101009F014809N/ATFDATPTDKEYFSLTDNMGSSSLGNIQVPQGSSRISRVDCAFSTFNAKGTSVVCRLLGSNMSEQNFTIWGSAGDTADAGAFQGYMSVPVAFPLAGVNNIDLQIAIQFNDGGSATASGGAVTLYFE*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.