NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold TahiMoana_1022350

Scaffold TahiMoana_1022350


Overview

Basic Information
Taxon OID3300001679 Open in IMG/M
Scaffold IDTahiMoana_1022350 Open in IMG/M
Source Dataset NameBlack smokers hydrothermal plume microbial communities from Tahi Moana, Lau Basin, Pacific Ocean
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2259
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → unclassified viruses → Circular genetic element sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers → Black Smokers Hydrothermal Plume → Black Smokers Hydrothermal Plume Microbial Communities From Tahi Moana, Lau Basin, Pacific Ocean

Source Dataset Sampling Location
Location NameTahi Moana, Lau Basin, Pacific Ocean
CoordinatesLat. (o)-20.682131Long. (o)-176.183363Alt. (m)Depth (m)2230
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005319Metagenome405Y
F005551Metagenome397Y
F100046Metagenome103Y

Sequences

Protein IDFamilyRBSSequence
TahiMoana_10223501F100046N/ARKTLVTASLVAMLGAFARSRFPQLKLGGSKLYFRI*
TahiMoana_10223504F005551N/AMTLAASKSVSRAKGGNIYGWSGSKALSASAVTLLDYTNPPAFYLTRITLGIDWSGISATEFISYTINVDGTALFVEKTIINADNLGTQPKMFEFMIPPNSTVKVQALQSNSNGFITCILTGYRI*
TahiMoana_10223506F005319N/AMTDAAFYLFALISFVIYFIIYTYYVPLKTQQKIESWLKSSESDETLLMSLDVITKKIREQMLIDFEEFMLPQARESLQKFWSGAMGNAAKELKGSEEGSNLSLLHNITQDLSGQPWYVQALASKMLPMITEAVKTQPKRTSDATIGMG

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