NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold TahiMoana_1023461

Scaffold TahiMoana_1023461


Overview

Basic Information
Taxon OID3300001679 Open in IMG/M
Scaffold IDTahiMoana_1023461 Open in IMG/M
Source Dataset NameBlack smokers hydrothermal plume microbial communities from Tahi Moana, Lau Basin, Pacific Ocean
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2177
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers → Black Smokers Hydrothermal Plume → Black Smokers Hydrothermal Plume Microbial Communities From Tahi Moana, Lau Basin, Pacific Ocean

Source Dataset Sampling Location
Location NameTahi Moana, Lau Basin, Pacific Ocean
CoordinatesLat. (o)-20.682131Long. (o)-176.183363Alt. (m)Depth (m)2230
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002426Metagenome560Y
F042083Metagenome159Y
F052279Metagenome143Y

Sequences

Protein IDFamilyRBSSequence
TahiMoana_10234611F052279GGAMTDELFALVWVLSFGLYLLIYTYWIPLRTQKKIESWLISEESNETLLASLGVITNQIREQALVDFEEFMI
TahiMoana_10234615F002426AGGAGMSGLQTRTYTLAGSALTAGTFTSISQLMGSSQSTTNPEGMNRVVRISLSCSPDHTSATDGVSVFKFAGDGVSVQQIFAGPSWSNQAVGPLDGNDGQPVVIENSAGIFDIIAGNQIDFSVSCTTAETVDVAVSITYAA*
TahiMoana_10234616F042083AGGAGMARRMTIPHPSITGMASGLAVANYLNQGTSVGAGVLRTGGVIKDTLDGNLNSAFSSLSKNAVDLATSPGGKAVLSSAIVLATAGGLARKWFPSVKLGGTKLYFKI*
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