NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold TahiMoana_1033508

Scaffold TahiMoana_1033508


Overview

Basic Information
Taxon OID3300001679 Open in IMG/M
Scaffold IDTahiMoana_1033508 Open in IMG/M
Source Dataset NameBlack smokers hydrothermal plume microbial communities from Tahi Moana, Lau Basin, Pacific Ocean
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1681
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers → Black Smokers Hydrothermal Plume → Black Smokers Hydrothermal Plume Microbial Communities From Tahi Moana, Lau Basin, Pacific Ocean

Source Dataset Sampling Location
Location NameTahi Moana, Lau Basin, Pacific Ocean
CoordinatesLat. (o)-20.682131Long. (o)-176.183363Alt. (m)Depth (m)2230
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F042020Metagenome / Metatranscriptome159N
F094399Metagenome106N
F098066Metagenome104Y

Sequences

Protein IDFamilyRBSSequence
TahiMoana_10335082F094399N/AMSKRQQRTPQEIIAETEARLERLRLREAQASAKSDPTLAPLLAHVDDLNKDIREAKKLLGDGPQSGNARISKHQAWIDRISLEMTEAEDALEFAEANKASVQAEVVKATLVLIKTSKENSAEG*QLRGGMV*
TahiMoana_10335083F098066N/AMNEFDERLHGEVDKALQYLLDHEMISMEWDPDAEEMVYYMTDKQRAMPNPEDWDTAI*
TahiMoana_10335084F042020GAGGMKPQFDLFESTFEEWLDELSLINHDESPGLRTVLNDLYMEGHTPLDARDALEVYWPEWHEELTYLEEHPIG*
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