NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold KiloMoana_10012546

Scaffold KiloMoana_10012546


Overview

Basic Information
Taxon OID3300001680 Open in IMG/M
Scaffold IDKiloMoana_10012546 Open in IMG/M
Source Dataset NameBlack smokers hydrothermal plume microbial communities from Kilo Moana, Pacific Ocean
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4356
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers → Black Smokers Hydrothermal Plume → Black Smokers Hydrothermal Plume Microbial Communities From Kilo Moana, Pacific Ocean

Source Dataset Sampling Location
Location NameKilo Moana, Lau Basin, Pacific Ocean
CoordinatesLat. (o)-20.054108Long. (o)-176.133522Alt. (m)Depth (m)2600
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F058539Metagenome135N
F095607Metagenome105N

Sequences

Protein IDFamilyRBSSequence
KiloMoana_1001254610F058539N/AMGLLDLITRQKTSRKRTFKEIRYDKILSKQQHIILESSLAANEALKMEVKSLRQVIFDQDDLQRELGIAPIEVTAQQQNVTSTGEFNAAELIASVAKGLKPDNIPGGRVA
KiloMoana_100125468F095607GGCGGMPFSVVGFGESEDRSGTPTAISPFAGDTISDVSGDELRISSIQNPAIAWLYTKSSAAGYPVNDWKLSSPEIAAVPLLGSSGDSVGSDTYFGTQISPVAVDTRLFPSGYGMTNSSPLTCTMEEDDEAGVAHTCSMVLGVVNQGEQVLYNDGYARVDYYNRITGFSGNVTVNQWEAYSCTSSGLTFNSLPDELVRIVNTRVEMANGTAYRWAFPGGSSSRPGGLVSNSNLSKTPEINNFPTRPFRAITEHPQIEVVGSTAETILSVEIAYQRV*
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