NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold KiloMoana_10016505

Scaffold KiloMoana_10016505


Overview

Basic Information
Taxon OID3300001680 Open in IMG/M
Scaffold IDKiloMoana_10016505 Open in IMG/M
Source Dataset NameBlack smokers hydrothermal plume microbial communities from Kilo Moana, Pacific Ocean
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3633
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → unclassified viruses → Circular genetic element sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers → Black Smokers Hydrothermal Plume → Black Smokers Hydrothermal Plume Microbial Communities From Kilo Moana, Pacific Ocean

Source Dataset Sampling Location
Location NameKilo Moana, Lau Basin, Pacific Ocean
CoordinatesLat. (o)-20.054108Long. (o)-176.133522Alt. (m)Depth (m)2600
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005551Metagenome397Y
F010737Metagenome300N

Sequences

Protein IDFamilyRBSSequence
KiloMoana_100165053F010737N/AMSVTTITRTYDSTPTDKTYFSLTSNMSSTSLGNIQTPQGSQRISRIDVAVDASDTKGFVLACRLLGSNMSEQNLTLAGSCGDVADAGGTPQFNMIPTNFSVAGVNNIDLQVAFQFSSGTPTASSLSVTLYFE*
KiloMoana_100165058F005551N/AKDGKIYGWSGSYALTSSAVTLLDYTNPSAFYLTRVTLGIDWSSISAGEVLSYTINVDDQALFVEKLVVLINNIGIQPKMFEFIIPPNSTVKIQASESANNGAISCILTGYRV*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.