NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold KiloMoana_10017439

Scaffold KiloMoana_10017439


Overview

Basic Information
Taxon OID3300001680 Open in IMG/M
Scaffold IDKiloMoana_10017439 Open in IMG/M
Source Dataset NameBlack smokers hydrothermal plume microbial communities from Kilo Moana, Pacific Ocean
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3502
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (62.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers → Black Smokers Hydrothermal Plume → Black Smokers Hydrothermal Plume Microbial Communities From Kilo Moana, Pacific Ocean

Source Dataset Sampling Location
Location NameKilo Moana, Lau Basin, Pacific Ocean
CoordinatesLat. (o)-20.054108Long. (o)-176.133522Alt. (m)Depth (m)2600
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015490Metagenome254Y
F016735Metagenome245Y
F042083Metagenome159Y

Sequences

Protein IDFamilyRBSSequence
KiloMoana_100174391F015490N/AMSCSPDHTSATDGVSVFKFAGDGVSVQQIFGGPAWSNQAAGPLDGNNGMPVVVENSAGIFDIIPGNQIDFSVSCTTAETVDVAVSITYAP*
KiloMoana_100174394F016735GAGGMSDELFALVWVLSFGLYLVIYTYWIPLRTQKKIESWLMSEESDETLLASLGVITNQIRETALGDFEEFMIPQGRKAAIDFWNGAMGNAAKKLGDTEEGSQLSLLHSMTEELKDQPWYVQAAASKLIPVIQKAADNQGKEKVTKLVHGKFGFD*
KiloMoana_100174397F042083AGGAGMARRRMAIPHPSITGMASGLAVANYLNQGTSVGIGTLKTGGVIKDTLDGNLNSAFSSLSKNAVDLATSPGGKAVLSSAIVLATAGGLARKWFPSVKLGGTKLYFKI*
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