Scaffold KiloMoana_10022139

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold KiloMoana_10022139

Scaffold KiloMoana_10022139

Overview

Basic Information
Taxon OID	3300001680 Open in IMG/M
Scaffold ID	KiloMoana_10022139 Open in IMG/M
Source Dataset Name	Black smokers hydrothermal plume microbial communities from Kilo Moana, Pacific Ocean
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2980
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (62.50%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers → Black Smokers Hydrothermal Plume → Black Smokers Hydrothermal Plume Microbial Communities From Kilo Moana, Pacific Ocean

Source Dataset Sampling Location
Location Name	Kilo Moana, Lau Basin, Pacific Ocean
Coordinates	Lat. (^o)	-20.054108	Long. (^o)	-176.133522	Alt. (m)		Depth (m)	2600
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F030294	Metagenome	186	Y
F043695	Metagenome	156	N

Sequences

Protein ID	Family	RBS	Sequence
KiloMoana_100221394	F030294	GAG	MAAGFSLVDDLNAGDVVGKVLAGNASAALKNLSKNAQGLVKTDSGRKSLVQAVGIAAIGAWARKALPATKIGGSKFYFKI*
KiloMoana_100221397	F043695	AGG	MTLSAGTGFNAVGREIFGFATQINFTDEASNTDRTAFDFTSPLQLYMCEMQPAINTSGMAANDILSFSLQGNGLAIFQTKFALAIANEPVQAQLPGIKFILPSRTILKAIFNMQSGTAMIGSATCMFRGVAFA*

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