Scaffold KiloMoana_10088903

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold KiloMoana_10088903

Scaffold KiloMoana_10088903

Overview

Basic Information
Taxon OID	3300001680 Open in IMG/M
Scaffold ID	KiloMoana_10088903 Open in IMG/M
Source Dataset Name	Black smokers hydrothermal plume microbial communities from Kilo Moana, Pacific Ocean
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1181
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers → Black Smokers Hydrothermal Plume → Black Smokers Hydrothermal Plume Microbial Communities From Kilo Moana, Pacific Ocean

Source Dataset Sampling Location
Location Name	Kilo Moana, Lau Basin, Pacific Ocean
Coordinates	Lat. (^o)	-20.054108	Long. (^o)	-176.133522	Alt. (m)		Depth (m)	2600
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000730	Metagenome / Metatranscriptome	917	Y
F003617	Metagenome / Metatranscriptome	477	Y
F060030	Metagenome	133	N

Sequences

Protein ID	Family	RBS	Sequence
KiloMoana_100889031	F060030	AGG	MIQKLLLEEGVKRGLKASREYSVSVLGYDFIGLISRLAIFFITGFLINSYFSATISGGIWLNSLAGFFGLNFPTTLPEWITKLFTTGFHNITFWQIVQTISVLIVVVEYMQYDRMLKQNNEQPNV
KiloMoana_100889032	F000730	GAG	LVSELIPPEIIPLVWFSAIAVTVYVFFRVFSSTLKEKFRQTNLSRKKAEGSVHTDSQIDDLINNAPRILNEINKTIAEQKEQGVSDEQMKGIYQKKQMLELVTNNAEVINIIGKPIIKKLLGLVKSL*
KiloMoana_100889033	F003617	N/A	KISLNFCAVLTCSAFTSGGLNIGGLHIKISERSSNDRLLYENTFQSGAATLGATGTSMHWFTQDIVETIKVRKGNPIDIQLNLVTVVTGTNTRQEGYAPVAPLLKTAVMKQFYETGISLHLHPDLSHADGVFKYKKERVSLLGQ*

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