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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300001681 Open in IMG/M |
| Scaffold ID | Abe_10023222 Open in IMG/M |
| Source Dataset Name | Black smokers hydrothermal plume microbial communities from Abe, Lau Basin, Pacific Ocean - IDBA |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3520 |
| Total Scaffold Genes | 9 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (66.67%) |
| Novel Protein Genes | 1 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (100.00%) |
| Associated Families | 1 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → unclassified viruses → Circular genetic element sp. | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers → Black Smokers Hydrothermal Plume → Black Smokers Hydrothermal Plume Microbial Communities From Abe, Lau Basin, Pacific Ocean |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Abe, ELSC, Pacific Ocean | |||||||
| Coordinates | Lat. (o) | -20.111307 | Long. (o) | -176.989014 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F005319 | Metagenome | 405 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Abe_100232229 | F005319 | AGG | MTDEQFLLIWIASFFLYFAIYTLWIPLKTQQKIESWLKSSESDETLLMSLEVITKKIREQMLIDFEEFMLPQARENLQKFWAGAMGNAAKELKGSEEGSNLSLLHNITQDLSGQPWYVQALASKMLPMITEAVKTQPKRTSDAVLGMGLQK* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |