Scaffold Abe_10024403

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Abe_10024403

Scaffold Abe_10024403

Overview

Basic Information
Taxon OID	3300001681 Open in IMG/M
Scaffold ID	Abe_10024403 Open in IMG/M
Source Dataset Name	Black smokers hydrothermal plume microbial communities from Abe, Lau Basin, Pacific Ocean - IDBA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3430
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (62.50%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers → Black Smokers Hydrothermal Plume → Black Smokers Hydrothermal Plume Microbial Communities From Abe, Lau Basin, Pacific Ocean

Source Dataset Sampling Location
Location Name	Abe, ELSC, Pacific Ocean
Coordinates	Lat. (^o)	-20.111307	Long. (^o)	-176.989014	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F014552	Metagenome	262	Y
F042083	Metagenome	159	Y

Sequences

Protein ID	Family	RBS	Sequence
Abe_100244031	F014552	N/A	TYSLGTPSLMRGLEKGQECEVKFLTDPKPVETEHGSKFDIQVQLLSHPHPDYLNLLRKEGKRLTWRTNCHVVRVTIVDLFANEVEDFQKDWYELTWTISCREDGNIWVEA*
Abe_100244036	F042083	AGGAG	MARRKPAMPHPSITGMAAGLSVAQYLNQGTSKAFGKGVIDDVLGGDLSDGFRALTDNAVDLATSASGKAVLSSAIVLATAGGLARKWFPSVKLGGTKLYFKI*

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