Scaffold Abe_10052997

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Abe_10052997

Scaffold Abe_10052997

Overview

Basic Information
Taxon OID	3300001681 Open in IMG/M
Scaffold ID	Abe_10052997 Open in IMG/M
Source Dataset Name	Black smokers hydrothermal plume microbial communities from Abe, Lau Basin, Pacific Ocean - IDBA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2273
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → unclassified viruses → Circular genetic element sp.	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers → Black Smokers Hydrothermal Plume → Black Smokers Hydrothermal Plume Microbial Communities From Abe, Lau Basin, Pacific Ocean

Source Dataset Sampling Location
Location Name	Abe, ELSC, Pacific Ocean
Coordinates	Lat. (^o)	-20.111307	Long. (^o)	-176.989014	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F005319	Metagenome	405	Y
F014809	Metagenome	260	Y

Sequences

Protein ID	Family	RBS	Sequence
Abe_100529971	F005319	N/A	MFFLVWFLSFGLYLVIYTWWIPIRTRKNIEAWLKSSESDKTLLMSLDVITKKIREQMLIDFEEFMLPQARESFQKFWTGAMGHAAKELKNSDQGSNLSLMHSITKELENQPYYIQMLGAKLLPIITEAAKKQPIGKSVAEIGMGLQQ*
Abe_100529975	F014809	N/A	TDNMNSSNLGNIQVPQGSTRISRVDCAFDTKNAAGYQVVCRLLGSNMSEQNFTIMGVAGDTADAGACVGFNSVPVAFGISGVNNIDLQIAIQFASAGSASASSGSVTLYFE*

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