NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Abe_10055514

Scaffold Abe_10055514


Overview

Basic Information
Taxon OID3300001681 Open in IMG/M
Scaffold IDAbe_10055514 Open in IMG/M
Source Dataset NameBlack smokers hydrothermal plume microbial communities from Abe, Lau Basin, Pacific Ocean - IDBA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2212
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers → Black Smokers Hydrothermal Plume → Black Smokers Hydrothermal Plume Microbial Communities From Abe, Lau Basin, Pacific Ocean

Source Dataset Sampling Location
Location NameAbe, ELSC, Pacific Ocean
CoordinatesLat. (o)-20.111307Long. (o)-176.989014Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002426Metagenome560Y
F042083Metagenome159Y

Sequences

Protein IDFamilyRBSSequence
Abe_100555142F002426AGGAGMAGLQTRTYTLAGSALTAGTFASISQLLGSSQSTTNPEGMNRVVRISMSCSPDHSSATDGVSVFKFAGDGVSVQQIFAGPSWSNQAAGPLDGNNGMPVVIENASGIFDIIAGNQIDFSVSCTTAETVDVAVSITYSA*
Abe_100555143F042083AGGAGMARYRKPAMPHPSITGMAAGLSVANYLNQGTSVGAGTTLTKGVIASTLGGNLQDAFSNLSENAIDLATSVNGKKVLSSAIVLATAGGLARKWFPSVKLGGTKMYFRI*
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