NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold GBIDBA_10011997

Scaffold GBIDBA_10011997


Overview

Basic Information
Taxon OID3300001683 Open in IMG/M
Scaffold IDGBIDBA_10011997 Open in IMG/M
Source Dataset NameHydrothermal vent plume microbial communities from Guaymas Basin, Gulf of California - IDBA assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8493
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (63.64%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From Guaymas Basin, Pacific Ocean

Source Dataset Sampling Location
Location NameGuyams Basin, Gulf of California, Pacific Ocean
CoordinatesLat. (o)27.015833Long. (o)-111.425Alt. (m)Depth (m)1993
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005103Metagenome / Metatranscriptome412Y
F009992Metagenome / Metatranscriptome310Y
F022526Metagenome214Y
F036420Metagenome170Y
F097510Metagenome104N

Sequences

Protein IDFamilyRBSSequence
GBIDBA_100119971F097510N/AMIKPFRIVWELIEFGLQALFIYVLVILIFIGVLFTIIHKEKNKEQEWNEAIKEAKIEYTKECTRIDGCRVRKDGTIEY*
GBIDBA_1001199711F005103N/AMDDIEIRINKKTVPLSHQNMARAINSFLPYLTNIDLTELGQDILDLMNHREKKEAESRLEVEKHSWPYPDTIKKD*
GBIDBA_1001199714F009992GAGMYNADIHGYNTDYPHDLGVVLGNGPSRDRDRKHYDGALTYGCNTIHKEMTVNVLVCMDAWYQFEVIASGYPAEHECLFGGWNPMPIEIPPDSLNPSHYDLYEYNPEDRKRADSWYYYATSAEDYERAVKENYTMPYWKPDCGYVCWATEGYIIKEVDYGVLPIGDLRPPSGAYALQEALRGGHDRVEVFGFDSIAGVFSTTSQITYNKHDIDDKKMIDDRLDKWMTFYKTVTEHYNKIEIIWHTKKD*
GBIDBA_1001199722F036420GAGMKIKIHARNIDTKLRVALYAMTEFALARLIPSRRLRNNLSINIHLKHHAHGGEAMMSETTNPKRPREFKVIVDPHQAEIDNYNRTRTDTEWG
GBIDBA_100119979F022526GGAGMGMNTKTVRVKEYRDYSRGGTPQERHMENVERGYTTSDTMTAVAVRYEVIEGKRYRVITL

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