Basic Information | |
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Taxon OID | 3300001683 Open in IMG/M |
Scaffold ID | GBIDBA_10015695 Open in IMG/M |
Source Dataset Name | Hydrothermal vent plume microbial communities from Guaymas Basin, Gulf of California - IDBA assembly |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 4464 |
Total Scaffold Genes | 12 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 11 (91.67%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From Guaymas Basin, Pacific Ocean |
Source Dataset Sampling Location | ||||||||
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Location Name | Guyams Basin, Gulf of California, Pacific Ocean | |||||||
Coordinates | Lat. (o) | 27.015833 | Long. (o) | -111.425 | Alt. (m) | Depth (m) | 1993 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F000245 | Metagenome / Metatranscriptome | 1468 | Y |
F002715 | Metagenome / Metatranscriptome | 535 | Y |
F006919 | Metagenome | 362 | Y |
Protein ID | Family | RBS | Sequence |
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GBIDBA_1001569511 | F002715 | AGGA | MPEHELQSVKLEVGLLKNEVEVRGRQIETLLQKLDLTTDKLQQLTVQIIQLNTRQEDYLRHSSTMTDEFKILHTRIGDLHDKQLAAQKEIEQRLDRLDQYKSKLMGMIIVVGGIVGTIVATAISVFLKD* |
GBIDBA_100156958 | F006919 | GAG | MKSFVQHLKEFTIKSTSDIVFEVGSQGQASSALKIPLSGPMFKRIWPDTIRTTVFHVLDAEDIYDLKKLEGKKKSISAFFSMMAKQMESGIAAGGGVVAELEADVIVSARDDIMSQVDKAGRRWVEMSWFENALSWGTPAGFNNVERGLDDLIRNLVLKYLEPIIGNRARTEHEFVLWGNMKRELKDSKKLSLVIKDYFDGVEKIIKKNKEVMGSIFYGYAKSKRMTDNAWDEQVVNNIEITKIHYLPKDEEVEDEEQQENIDAFVAKYKIPSKRWEYSSELEIYTREVTQAEVRTMSK* |
GBIDBA_100156959 | F000245 | GAGG | MKTFSRFKESKLDDKLDKLVSNEIKKRKLAKFPVNATDDIKMRMKPNKPVFKFPSPNSDMMIYVYLRKMTPPKKGMMAFNYQLEDK* |
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