NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold GBIDBA_10026824

Scaffold GBIDBA_10026824


Overview

Basic Information
Taxon OID3300001683 Open in IMG/M
Scaffold IDGBIDBA_10026824 Open in IMG/M
Source Dataset NameHydrothermal vent plume microbial communities from Guaymas Basin, Gulf of California - IDBA assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3864
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (50.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From Guaymas Basin, Pacific Ocean

Source Dataset Sampling Location
Location NameGuyams Basin, Gulf of California, Pacific Ocean
CoordinatesLat. (o)27.015833Long. (o)-111.425Alt. (m)Depth (m)1993
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008914Metagenome326Y
F009992Metagenome / Metatranscriptome310Y
F035489Metagenome172Y
F079207Metagenome116Y

Sequences

Protein IDFamilyRBSSequence
GBIDBA_100268241F079207GAGMKIKIHARNIDTKLRIALYAMTEFALARLVPSRRLRNNLSINI
GBIDBA_1002682410F009992N/ALYSRSPITQEMNNIPHDIGYVLGNGPSRDRSRTQYDGVTYGCNSIHAEMNVDMLVCMDAWYQFEVIASGYPADHECLFGGYNPMPVGVKPEDLNPPHYGIHYYNPEDRRTADNWYYYATSAADYEKAKKENYAMSYWKPDCGYVCWVSEGYKIKEVDYGVIPIGDLRPPSGAYALQEALKGGHDKIEVIGFDSIAGVFSTSSQLAFKEHDSSDDTIIQYRMDKWITFYKTVTEQYNEIEIIWHTKED*
GBIDBA_100268244F035489N/AMGNDAANQYYIIWLDESLRHITWGFKPQFEHMSTGLCALQLALETGYDEIDVIGFSGLKDRNYKNVYDGTKNYTFDPAVSDKVRVPETYVPLDASHWESVYINLVKQYPNTKINLI*
GBIDBA_100268248F008914AGGAGMNAQREAVVEETRQWVRGWDAEQREMVLWILEEEVRHDKLMDFVHEDGSKTKPEKLN*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.