NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold GBIDBA_10055555

Scaffold GBIDBA_10055555


Overview

Basic Information
Taxon OID3300001683 Open in IMG/M
Scaffold IDGBIDBA_10055555 Open in IMG/M
Source Dataset NameHydrothermal vent plume microbial communities from Guaymas Basin, Gulf of California - IDBA assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2754
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (72.73%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From Guaymas Basin, Pacific Ocean

Source Dataset Sampling Location
Location NameGuyams Basin, Gulf of California, Pacific Ocean
CoordinatesLat. (o)27.015833Long. (o)-111.425Alt. (m)Depth (m)1993
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002348Metagenome / Metatranscriptome568Y
F008692Metagenome / Metatranscriptome329Y
F018198Metagenome236Y
F048371Metagenome148Y

Sequences

Protein IDFamilyRBSSequence
GBIDBA_100555552F018198GAGGMNNHLPFTISSENMADKKNLATIKIYIDGKEMLYSHQNIIGAINAFLPYLTNDDLDELMLRFHTLKEHRRQKEYSALLEAREKSIQKNRHDT*
GBIDBA_100555555F002348GGAMKPNEKWVKYGGWLLSLFHVALLGFALIYLGVRIFNFSTFEEYREKRMKLLYKLLK*
GBIDBA_100555556F008692AGGAGMAKRKGNKQKRAIKDEFYMPTSEEEFQADLDAEDMRYFQYCREQEEMYNDPVMNWSGLR*
GBIDBA_100555558F048371N/AMVMDFGKVIGMTFLTFMLLSYVSFIAEWNYFMFVRMIRFFHYIDLSLEYWVFLDRYIFNGIL*
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