NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold JGI20128J18817_1002672

Scaffold JGI20128J18817_1002672


Overview

Basic Information
Taxon OID3300001684 Open in IMG/M
Scaffold IDJGI20128J18817_1002672 Open in IMG/M
Source Dataset NameHot spring microbial communities from Joseph's Coat, Yellowstone National Park, USA - JC2_E
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4528
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (72.73%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Microbial Mats → Hot Spring → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location
Location NameJoseph's Coat, Yellowstone National Park, Washington, USA
CoordinatesLat. (o)44.376Long. (o)-110.69Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F061983Metagenome / Metatranscriptome131Y
F080247Metagenome / Metatranscriptome115Y

Sequences

Protein IDFamilyRBSSequence
JGI20128J18817_10026728F080247N/ALIECLIDADINYLNGEPFNTQLRMRGKFLTFGNINIFEKTMPAGLETEQTIQICSPIDATFITYYQGMVAIMSFYFRDSNLYANISLTDPDTIKEFLILSTYYRKYGVNIPNVLDKIMYRKVPT*
JGI20128J18817_10026729F061983AGGAGGLKNYVFKVKVVPIKLFNEEGVLSEQEFEQVKKTGLYKGMKVLEVKDLGYDSFWRNIHYYELIVISEGEGLFDCYYDDVIIVEKLKEVEGIIIKEKDPEPVKVMKKLVASWYQKKLVDEEKAYDVCKKFIM*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.