NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI24024J18818_10008312

Scaffold JGI24024J18818_10008312


Overview

Basic Information
Taxon OID3300001685 Open in IMG/M
Scaffold IDJGI24024J18818_10008312 Open in IMG/M
Source Dataset NameOil polluted marine microbial communities from Coal Oil Point, Santa Barbara, California, USA - Sample 2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4273
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oil Seeps → Unclassified → Marine → Marine Microbial Communities From The Santa Barbara Channel Oil Seeps

Source Dataset Sampling Location
Location NameCoal Oil Point, Santa Barbara, CA
CoordinatesLat. (o)34.39192Long. (o)-119.84578Alt. (m)Depth (m)47
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F039402Metagenome / Metatranscriptome164Y
F044014Metagenome155Y

Sequences

Protein IDFamilyRBSSequence
JGI24024J18818_100083123F039402AGGAGMSLVDYTELEKDISNAPEPKILPRGSEVKARIIAMRSGISDKNNCQWYQPVFDVPDEPMVIEFNTFFWDLADAQGKIDDKQFQRSLNTFRNFASAFGLDYSRPFSWEDDLIGLEGWVILGVKKDDEYGDSNTIKKYVVGR*
JGI24024J18818_100083127F044014AGGAGMIQEYKPRFSFEISWEQKNRADRLLAAYGLRRALFGNILDDVLDMIDEFGGIAIGVIMSGKVKPRDIIPLMKQAEEVGKK*
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Institute for Fundamental Biomedical Research
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