NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold C688J18823_10010471

Scaffold C688J18823_10010471


Overview

Basic Information
Taxon OID3300001686 Open in IMG/M
Scaffold IDC688J18823_10010471 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from Hopland, California, USA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6066
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (44.44%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Grasslands → Soil → Soil Microbial Communities From Mediterranean Grasslands, California

Source Dataset Sampling Location
Location NameUSA: Hopland, California
CoordinatesLat. (o)38.99297339Long. (o)-123.0674491Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018331Metagenome / Metatranscriptome235Y
F037998Metagenome167Y

Sequences

Protein IDFamilyRBSSequence
C688J18823_100104713F037998GGAGMIYGRRPRQLLITWGIALVLAGLIYWFEVTAPAFHMLLLPFYWIIAGVTVFLTWRWFRGRSRKDRRGADRRHADRRDNGPTSSE*
C688J18823_100104716F018331N/AMTSRTGLEAEAITRLTDGVQPRGIRAILVQCLAGEVAPSAAISRMLAAEPLAVVRAAIDDVTRRAATISRAGDTLVRDRVDELTQIFMEKTPDLADVSDASKNRSAPWVERASRHGESEDRGESRTSG*
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