NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold WOR8_10020158

Scaffold WOR8_10020158


Overview

Basic Information
Taxon OID3300001687 Open in IMG/M
Scaffold IDWOR8_10020158 Open in IMG/M
Source Dataset NameDeep Marine Sediments WOR-3-8_10
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6316
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (64.29%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Sediment → Marine Sediment → Marine Sediment Microbial Communities From White Oak River Estuary, North Carolina

Source Dataset Sampling Location
Location NameWhite Oak River estuary, North Carolina, USA
CoordinatesLat. (o)34.640199Long. (o)-77.109447Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027502Metagenome194Y
F048284Metagenome148Y

Sequences

Protein IDFamilyRBSSequence
WOR8_100201585F027502GAGMTLNARQRQLRERDVRKLSPELNADTFMQLYMESNFPQTSSLPSPKQTQLGLGDQQLADSLKLKQTKPKSGTGYDNPGLS*
WOR8_100201586F048284GGTGGVFSKADYELAARILGLPVPQTTAEMAAATPATAEIVRRFGQGLPPMPGMEGDGFYTGATRSLNGYPDNTMPMQKAQLASRLRTEPERPHEDAYLMELLALLDPEEYQLIMMLLEQLSDQEDEESDRLSSQRPMEYDTPNLGSNYSVLNAPSSNGIEPSRAYQALS*
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