Scaffold WOR8_10022605

Basic Information
Taxon OID	3300001687 Open in IMG/M
Scaffold ID	WOR8_10022605 Open in IMG/M
Source Dataset Name	Deep Marine Sediments WOR-3-8_10
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300001687 Open in IMG/M

Scaffold ID

WOR8_10022605 Open in IMG/M

Source Dataset Name

Deep Marine Sediments WOR-3-8_10

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	5908
Total Scaffold Genes	19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (26.32%)
Novel Protein Genes	10 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (20.00%)
Associated Families	10

Scaffold Components

Scaffold Length (bps)

5908

Total Scaffold Genes

19 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

5 (26.32%)

Novel Protein Genes

10 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (20.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Sediment → Marine Sediment → Marine Sediment Microbial Communities From White Oak River Estuary, North Carolina

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Sediment → Marine Sediment → Marine Sediment Microbial Communities From White Oak River Estuary, North Carolina

Source Dataset Sampling Location
Location Name	White Oak River estuary, North Carolina, USA
Coordinates	Lat. (^o)	34.640199	Long. (^o)	-77.109447	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

White Oak River estuary, North Carolina, USA

Coordinates

Lat. (^o)

34.640199

Long. (^o)

-77.109447

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001120	Metagenome / Metatranscriptome	772	Y
F001165	Metagenome / Metatranscriptome	760	Y
F001807	Metagenome / Metatranscriptome	631	Y
F007026	Metagenome	359	Y
F015587	Metagenome	253	Y
F019817	Metagenome	227	Y
F020342	Metagenome / Metatranscriptome	224	Y
F029405	Metagenome / Metatranscriptome	188	Y
F056536	Metagenome	137	N
F105068	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
WOR8_100226051	F105068	N/A	IMDILYFTLTTEDAIFQFQVNKAEDLVRVTKMILKAKCQGEWHRSTLMTVDAGRKLVRQLQAR*
WOR8_1002260510	F029405	N/A	MRDPNFIDEQRNADFLDAMSDIAYEQEEAMRESNQSDWDGIEDISSAERNACDHYNERYVINDYHY*
WOR8_1002260512	F019817	N/A	MPATTLPALTINQRNLYTYFLNHSKKYGNTPCFVPKLPAQSSRLDQYLQALIKLEQYGLICVDRTSDNYTGWIMSKPRTE*
WOR8_1002260513	F007026	N/A	MSYPQVNWKKNEYHQLQEAVDLLKAILERESKRHQMDQDLVPGDDDVVQEAIGLLEEIIDYDPTPNELGEPPITLDEMHTAAWKEHQAMHS*
WOR8_1002260514	F001165	N/A	MSNSSTPRIPDSLDMQRLQAMQLVAKMKESADKHGIGFIGGFIAPNGEKFVMSNMDDEDTNALLPDNLK*
WOR8_1002260516	F001120	GGAG	MTKDKSPLNFDRTIAGFNITENGIKSYTKSFQLGPFQLTLNARESGVRGSISIPGTGLSKRNIKLI*
WOR8_1002260517	F020342	N/A	MSAVTDNLNMFDRINLAACARRRASDNVLNSTRFEGEYDTARLWMKYRLVKYSTYSYIDED*
WOR8_1002260518	F001807	N/A	MTVLAIEDTSFTDTHVTVTAVVDEMRLLYRATHFEPEEWAPALCQATIELDPEEPIPLDEDGFCAYLDHLDPQWQLLDTSVGYPD*
WOR8_100226053	F056536	GGTGG	MLSYYPYEGAKKRITWHGGESTMLHYQVEVDDYKGDPDWIDRYSQTLGGGIPCGTKELLAAMSDYYQYISTMELDTKAGTIF*
WOR8_100226054	F015587	N/A	MTALNLRKNIAALLVTTAAAVENAKLPNKEAARTKLNEYRLRAAALMMPNDMAFVITPNQDN*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters