NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI24523J20078_1031471

Scaffold JGI24523J20078_1031471


Overview

Basic Information
Taxon OID3300001718 Open in IMG/M
Scaffold IDJGI24523J20078_1031471 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-48
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)604
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)50.0005Long. (o)-144.9964Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005105Metagenome / Metatranscriptome412Y
F012166Metagenome283Y

Sequences

Protein IDFamilyRBSSequence
JGI24523J20078_10314712F005105N/AMARKICDRCMGNGYRRIWKDXTESEKITIQCTKCESAGEIDEESNYDSNDFGTDKLQ*
JGI24523J20078_10314713F012166N/AMADLINNGVFLERKLTPEEKLWKAVLSQGVYEACSKRYNALPLTYGEMRSALEWISLSNKDFCVVCQFAGYDPTYILRKAKDKVNKWLPNGA*

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