NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI24513J20088_1012301

Scaffold JGI24513J20088_1012301


Overview

Basic Information
Taxon OID3300001720 Open in IMG/M
Scaffold IDJGI24513J20088_1012301 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-36
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1028
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)50.0Long. (o)-145.0Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012166Metagenome283Y
F015027Metagenome / Metatranscriptome258Y

Sequences

Protein IDFamilyRBSSequence
JGI24513J20088_10123011F015027AGGAGMRDKLYEATSKEVMSEHEEYVNADVPREIWIQRNKFLHKHIETLEKEINDIRRDNIKLTQQIE
JGI24513J20088_10123015F012166GAGMADLANSGVFLGRKXTPEEKLWKAVLSQGVYEACSKKYNALPLTXGEMRSALEWIDMSNKDFCDVCSFAGYDPRYILRKTKDKVNKWLPNGS*

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