NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI24513J20088_1014789

Scaffold JGI24513J20088_1014789


Overview

Basic Information
Taxon OID3300001720 Open in IMG/M
Scaffold IDJGI24513J20088_1014789 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-36
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)912
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)50.0Long. (o)-145.0Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F046692Metagenome151N

Sequences

Protein IDFamilyRBSSequence
JGI24513J20088_10147892F046692GGAGGMNQVAQKLQIEESLEHEISLVPFDKVPLIWKKVEKYLKKSANRSGGRTTIEDIYYELINNKTNLWIIFEKTSDEIIGVQITLFNTYPTGKKMLNLEHTAGINMQDWVEKGIDVITKFAKDTECEGLEGIGRHGQWNWVKNKKGWKKPATFYEYIFEENK*

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