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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300001727 Open in IMG/M |
| Scaffold ID | JGI24529J20061_107540 Open in IMG/M |
| Source Dataset Name | Marine viral communities from the Pacific Ocean - LP-55 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 548 |
| Total Scaffold Genes | 1 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (100.00%) |
| Novel Protein Genes | 1 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (100.00%) |
| Associated Families | 1 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Apicomplexa → Conoidasida → Coccidia → Eucoccidiorida → Eimeriorina → Cryptosporidiidae → Cryptosporidium → Cryptosporidium parvum | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Pacific Ocean | |||||||
| Coordinates | Lat. (o) | 49.567 | Long. (o) | -138.6676 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F008153 | Metagenome | 338 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| JGI24529J20061_1075401 | F008153 | GGAG | MPKKDLITVNNVNIQPLIESLVELVKDKKVTGELDDLINAKVPEKTSADWKLICGVLCNSIVEWVAVNKDDEVNPKDLLRHLQSDIGYIMKRLGLI* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |