NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold JGI24521J20086_1000603

Scaffold JGI24521J20086_1000603


Overview

Basic Information
Taxon OID3300001728 Open in IMG/M
Scaffold IDJGI24521J20086_1000603 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-46
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8634
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (45.45%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → unclassified Chromatiaceae → Chromatiaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)49.9991Long. (o)-144.9989Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023219Metagenome211Y
F063084Metagenome130N
F065136Metagenome128Y

Sequences

Protein IDFamilyRBSSequence
JGI24521J20086_100060310F023219GAGGMVGDHGIMVPHHFPLTKGNSMLSSITNIVRSNQNAVMVRVGSSSQSVYTIFDLKAGTNSFTGSLAGAKSAWNRNYKNSRQFVAKGNHRYLTA*
JGI24521J20086_100060313F063084GGAGMTLLDLTLEAMIQECAALGIDTIEHAETILDMYHDGFTSYEVMEMVEVIQDRDHYAYIPEL*
JGI24521J20086_10006037F065136N/AMNNSIRITRQGGVQYTFENGYTLSIGCGVGHYSSNQDKEDSSGACTEVEVAVMNPAGGFVALEYDVAGWVKASVIPSLFRAVEAKDWEHIALLCGQDEYNHSENRRDLDPTSDQSQAGGYYAELDQYA*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.