NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI24514J20073_1003918

Scaffold JGI24514J20073_1003918


Overview

Basic Information
Taxon OID3300001731 Open in IMG/M
Scaffold IDJGI24514J20073_1003918 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-37
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2087
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)50.0Long. (o)-145.0Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009536Metagenome / Metatranscriptome316Y
F013896Metagenome / Metatranscriptome267Y
F019487Metagenome229Y

Sequences

Protein IDFamilyRBSSequence
JGI24514J20073_10039181F019487GGTGGMMSDKDIKEFHDLDKLKQYNPLPSGITVADSGIAGQGLFTTKRLVMGTTLG
JGI24514J20073_10039184F013896GGTGGMICDKCNGNGFTLVKGETIQCKKCLSSGEIKETMTPPKYSEDDLSNIYQTLYETSLKLSESSDPGMVAASLMAIGSRIYKTILTTEDYDRIMDRILNTDVEPFKKETLQ*
JGI24514J20073_10039186F009536AGGAMMSSKEVMKQALDLMSGTLKEEIKNNLDNTRSYTRLFVKICEEIDGMKVKLPKFTALKNDILKINKQTHSITTDEIKYSIPESQSTLSVKDIERWLETAKKKDQLIYYTGRTLDHPKSVKEEAVFRKARNLAMEYDNIPFKNKKYQYRGSVKGEWGCNYKDIVTLVQKKVANLQRDTVWDEEKKSYVPGNIISYPIYNYIMIKI*
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