NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold JGI24668J20090_10086909

Scaffold JGI24668J20090_10086909


Overview

Basic Information
Taxon OID3300001734 Open in IMG/M
Scaffold IDJGI24668J20090_10086909 Open in IMG/M
Source Dataset NameOlavius algarvensis symbiont microbial communities from Tuscany, Italy - Type A ELBA extract 1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)810
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Annelida → Digestive System → Unclassified → Unclassified → Marine Gutless Worms Symbiont → Marine Gutless Worms Symbiont Microbial Communities From Various Locations

Source Dataset Sampling Location
Location NameZanca-sant'andrea, Tuscany, Italy
CoordinatesLat. (o)42.8072Long. (o)10.1411Alt. (m)Depth (m)6
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017238Metagenome242Y
F021203Metagenome220Y
F022994Metagenome212Y

Sequences

Protein IDFamilyRBSSequence
JGI24668J20090_100869091F022994GAGMSNGVFNFNFLALVVFEILGGPKFTLGTPVPPCTPPSGNFFVHEASTLLCLMAILISTF*
JGI24668J20090_100869092F017238GAGMSNGDFNFNFLAYLLSELLGGSQIYTMGPYAPWTPPSGEIFVPKANISQCLIVFLISTFYLKYFPGY*
JGI24668J20090_100869093F021203N/AMSNCVFNFNILPQVLSGILGWSKIYIRGSCAPRRPPSKKILTCAQELAYIYITVNFQLRNCIHAGLTEHSLYNRFALKNLPKWGFGGILGGGREGLRHLVGTPLGMQ*

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.