NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI24658J20074_1006877

Scaffold JGI24658J20074_1006877


Overview

Basic Information
Taxon OID3300001739 Open in IMG/M
Scaffold IDJGI24658J20074_1006877 Open in IMG/M
Source Dataset NameMarine viral communities from the Deep Pacific Ocean - MSP-121
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1328
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)10.0693Long. (o)-99.2557Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F065114Metagenome128N
F075333Metagenome119N

Sequences

Protein IDFamilyRBSSequence
JGI24658J20074_10068772F065114N/AMNKQNLNLETPLLRGDRNAVMPSLGHGNGLSYRERETPESVSIGGLGCFGKVGAVGVPALWTAMKRLMPSPLNLSLYNPESLMSIFGVSERTEVSTESALQGCFVVKHKTQRLEDLTGDGYEKE*
JGI24658J20074_10068773F075333AGGAGMKKNSMKYLEGLVERGVRKHLPALKHFRYRERGIESIVNGVVPTEHKDLMTVTKTARWLTTRAPEEYVYGEMVDIDNAIASNIAQYLTDYAKSYIGKVA*
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