Scaffold JGI24656J20076_1012230

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold JGI24656J20076_1012230

Scaffold JGI24656J20076_1012230

Overview

Basic Information
Taxon OID	3300001740 Open in IMG/M
Scaffold ID	JGI24656J20076_1012230 Open in IMG/M
Source Dataset Name	Marine viral communities from the Deep Pacific Ocean - MSP-114
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1104
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	14.5287	Long. (^o)	-118.7737	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000060	Metagenome / Metatranscriptome	2944	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24656J20076_10122302	F000060	N/A	MAQKFNTEFNYRYQVIGCTPWEKIKTLKGFLEGRLRALACEEAGKLKYQAKLSKLKHLQNSGNGLEHEILELKAEIIETESFHETLKEGYELTRDEIKILKKLMKELYVIAEPTRIKGYTDEXMFEANAANEFTVNMGREIQSEMIANGRPSAARIRNAMSNPHTWNALKQIGLIPKKTKILEGNINPQLKIELKGVDDEIIQIKSK*

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